8BH6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8BH6_001 | 1/a/13:23 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8BH6_006 | 1/a/267:275 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8BH6_007 | 1/a/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_8BH6_008 | 1/a/328:341 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_8BH6_013 | 1/a/530:535 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.4 | |
| HL_8BH6_014 | 1/a/625:631 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_8BH6_021 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.2 | |
| HL_8BH6_024 | 1/a/1088:1093 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8BH6_025 | 1/a/1101:1108 | T-loop related | homologous HL_4LFB_025 HL_63894.3 | |
| HL_8BH6_030 | 1/a/1367:1377 | No text annotation | homologous HL_5J7L_029 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8BH6_002 | No text annotation | ||
| HL_8BH6_003 | GNRA | ||
| HL_8BH6_004 | No text annotation | ||
| HL_8BH6_033 | No text annotation | ||
| HL_8BH6_005 | No text annotation | ||
| HL_8BH6_009 | UNCG | ||
| HL_8BH6_010 | GNRA | ||
| HL_8BH6_011 | UNCG | ||
| HL_8BH6_012 | GNRA with extra near cWW | ||
| HL_8BH6_015 | No text annotation | ||
| HL_8BH6_016 | GNRA | ||
| HL_8BH6_017 | No text annotation | ||
| HL_8BH6_018 | No text annotation | ||
| HL_8BH6_019 | GNRA | ||
| HL_8BH6_020 | GNRA | ||
| HL_8BH6_022 | GNRA | ||
| HL_8BH6_034 | No text annotation | ||
| HL_8BH6_023 | No text annotation | ||
| HL_8BH6_026 | No text annotation | ||
| HL_8BH6_027 | GNRA | ||
| HL_8BH6_028 | GNRA | ||
| HL_8BH6_029 | T-loop with 3 stacked bulged bases | ||
| HL_8BH6_031 | Mini UNCG | ||
| HL_8BH6_032 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8BH6_001 | 1/a/31:33, 1/a/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_8BH6_002 | 1/a/45:46, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8BH6_003 | 1/a/48:53, 1/a/367:369 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8BH6_008 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_8BH6_009 | 1/a/132:136, 1/a/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.3 | |
| IL_8BH6_012 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_8BH6_013 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8BH6_014 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8BH6_016 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 NA | |
| IL_8BH6_066 | 1/a/454:471, 1/a/479:496 | No text annotation | ||
| IL_8BH6_019 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8BH6_020 | 1/a/523:529, 1/a/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8BH6_021 | 1/a/577:583, 1/a/890:891 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8BH6_022 | 1/a/588:592, 1/a/765:769 | tSH-tWH-tHS | homologous IL_4LFB_023 IL_05821.2 | |
| IL_8BH6_023 | 1/a/602:604, 1/a/652:653 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8BH6_024 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.3 | |
| IL_8BH6_025 | 1/a/612:613, 1/a/640:642 | Single bulged U | geometric IL_8VMA_002 IL_97561.6 | |
| IL_8BH6_067 | 1/a/612:620, 1/a/636:642 | No text annotation | ||
| IL_8BH6_026 | 1/a/613:620, 1/a/636:640 | No text annotation | geometric IL_5J7L_030 NA | |
| IL_8BH6_073 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.2 | |
| IL_8BH6_044 | 1/a/1072:1073, 1/a/1206:1208 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_8BH6_045 | 1/a/1073:1075, 1/a/1204:1206 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.5 | |
| IL_8BH6_053 | 1/a/1314:1319, 1/a/1340:1345 | No text annotation | geometric IL_4LFB_055 IL_57885.3 | |
| IL_8BH6_063 | 1/a/1446:1448, 1/a/1476:1478 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8BH6_004 | Minor groove platform | ||
| IL_8BH6_005 | Multiple bulged bases | ||
| IL_8BH6_006 | Tandem non-canonical cWW pairs | ||
| IL_8BH6_072 | No text annotation | ||
| IL_8BH6_007 | No text annotation | ||
| IL_8BH6_010 | tWH-tWH-tHW-tHW | ||
| IL_8BH6_011 | Isolated non-canonical cWW pair | ||
| IL_8BH6_015 | Single bulged U | ||
| IL_8BH6_017 | Single bulged G | ||
| IL_8BH6_018 | No text annotation | ||
| IL_8BH6_027 | No text annotation | ||
| IL_8BH6_068 | No text annotation | ||
| IL_8BH6_028 | Tandem non-canonical cWW pairs | ||
| IL_8BH6_029 | Tandem non-canonical cWW pairs | ||
| IL_8BH6_030 | No text annotation | ||
| IL_8BH6_031 | Kink-turn | ||
| IL_8BH6_032 | Other IL | ||
| IL_8BH6_033 | tSH-tWH-tHS | ||
| IL_8BH6_034 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_8BH6_035 | Single bulged A | ||
| IL_8BH6_036 | Isolated non-canonical cWW pair | ||
| IL_8BH6_069 | Single bulged G | ||
| IL_8BH6_037 | Minor groove platform | ||
| IL_8BH6_038 | Minor groove platform | ||
| IL_8BH6_070 | No text annotation | ||
| IL_8BH6_039 | Minor groove platform | ||
| IL_8BH6_040 | Single stack bend | ||
| IL_8BH6_041 | Single bulged U | ||
| IL_8BH6_042 | Isolated cWS basepair | ||
| IL_8BH6_043 | Minor groove platform | ||
| IL_8BH6_046 | Isolated non-canonical cWW pair | ||
| IL_8BH6_047 | Minor groove platform | ||
| IL_8BH6_048 | Minor groove platform | ||
| IL_8BH6_049 | No text annotation | ||
| IL_8BH6_050 | No text annotation | ||
| IL_8BH6_051 | 180 degree turn | ||
| IL_8BH6_052 | Double sheared with non-canonical cWW | ||
| IL_8BH6_071 | No text annotation | ||
| IL_8BH6_054 | Isolated non-canonical cWW pair | ||
| IL_8BH6_055 | No text annotation | ||
| IL_8BH6_056 | No text annotation | ||
| IL_8BH6_057 | Isolated non-canonical cWW pair | ||
| IL_8BH6_058 | Isolated non-canonical cWW pair | ||
| IL_8BH6_059 | Isolated non-canonical cWW pair | ||
| IL_8BH6_060 | Double sheared | ||
| IL_8BH6_061 | Tandem non-canonical cWW pairs | ||
| IL_8BH6_062 | Triple sheared related | ||
| IL_8BH6_064 | Isolated tHS basepair with bulges | ||
| IL_8BH6_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8BH6_010 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8BH6_011 | 1/a/47:53, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_4LFB_014 J3_63856.2 | |
| J3_8BH6_012 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation | geometric J3_1KUQ_001 J3_01633.2 | |
| J3_8BH6_013 | 1/a/594:596, 1/a/659:667, 1/a/754:763 | No text annotation | ||
| J3_8BH6_001 | 1/a/834:837, 1/a/867:871, 1/a/878:884 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8BH6_004 | 1/a/965:972, 1/a/983:994, 1/a/1232:1236 | No text annotation | homologous J3_4LFB_004 J3_88451.2 | |
| J3_8BH6_007 | 1/a/1075:1080, 1/a/1119:1125, 1/a/1198:1204 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8BH6_017 | 1/a/1085:1086, 1/a/1095:1098, 1/a/1111:1114 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8BH6_008 | 1/a/1128:1130, 1/a/1166:1169, 1/a/1192:1195 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8BH6_018 | 1/a/1128:1130, 1/a/1166:1172, 1/a/1186:1195 | No text annotation | homologous J3_5J7L_054 NA | |
| J4_8BH6_001 | 1/a/114:122, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_8BH6_004 | 1/a/583:585, 1/a/772:777, 1/a/818:829, 1/a/889:890 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_8BH6_002 | 1/a/59:62, 1/a/105:112, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8BH6_014 | No text annotation | ||
| J3_8BH6_002 | No text annotation | ||
| J3_8BH6_003 | No text annotation | ||
| J3_8BH6_005 | No text annotation | ||
| J3_8BH6_015 | No text annotation | ||
| J3_8BH6_006 | No text annotation | ||
| J3_8BH6_016 | No text annotation | ||
| J3_8BH6_009 | No text annotation | ||
| J4_8BH6_002 | No text annotation | ||
| J4_8BH6_003 | No text annotation | ||
| J5_8BH6_003 | No text annotation | ||
| J5_8BH6_001 | No text annotation |
Coloring options: