HL_8BH6_012

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUAACUGU

Length

9 nucleotides

Bulged bases

8BH6|1|a|C|476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH6_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4714

The information below is about HL_5J7L_012

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BH6|1|a|A|471
8BH6|1|a|G|472
8BH6|1|a|U|473
8BH6|1|a|A|474
8BH6|1|a|A|475
8BH6|1|a|C|476
8BH6|1|a|U|477
8BH6|1|a|G|478
8BH6|1|a|U|479

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16