HL_8BH7_034

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH7_034 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2444

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BH7|1|a|A|328
8BH7|1|a|A|329
8BH7|1|a|C|330
8BH7|1|a|U|331
8BH7|1|a|G|332
8BH7|1|a|A|333
8BH7|1|a|G|334
8BH7|1|a|A|335
8BH7|1|a|C|336
8BH7|1|a|A|337
8BH7|1|a|C|338
8BH7|1|a|G|339
8BH7|1|a|G|340
8BH7|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20