HL_8BHF_001
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGUGGUUAA
- Length
- 10 nucleotides
- Bulged bases
- 8BHF|1|21|G|18, 8BHF|1|21|U|19, 8BHF|1|21|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_001 not in the Motif Atlas
- Homologous match to HL_4LCK_001
- Geometric discrepancy: 0.1941
- The information below is about HL_4LCK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|21|U|13
8BHF|1|21|A|14
8BHF|1|21|G|15
8BHF|1|21|U|16
8BHF|1|21|G|17
8BHF|1|21|G|18
8BHF|1|21|U|19
8BHF|1|21|U|20
8BHF|1|21|A|21
8BHF|1|21|A|22
Current chains
- Chain 21
- P-site tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain b1
- Ribosomal protein L36a like
- Chain n1
- CCR4-NOT transcription complex subunit 3
- Chain s3
- 60S ribosomal protein L11
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