8BHF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8BHF_001 | 1/21/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_8BHF_002 | 1/21/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
| HL_8BHF_003 | 1/21/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_8BHF_004 | 1/A2/37:44 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_8BHF_005 | 1/A2/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8BHF_006 | 1/A2/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_8BHF_007 | 1/A2/131:137 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_8BHF_008 | 1/A2/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8BHF_009 | 1/A2/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_8BHF_010 | 1/A2/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8BHF_011 | 1/A2/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8BHF_012 | 1/A2/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8BHF_013 | 1/A2/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8BHF_014 | 1/A2/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8BHF_016 | 1/A2/963:971 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_8BHF_018 | 1/A2/1315:1324 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8BHF_020 | 1/A2/1387:1392 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8BHF_021 | 1/A2/1406:1409 | No text annotation | ||
| HL_8BHF_023 | 1/A2/1479:1486 | UNCG variation | geometric HL_5J7L_200 HL_08100.1 | |
| HL_8BHF_024 | 1/A2/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8BHF_025 | 1/A2/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8BHF_026 | 1/A2/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8BHF_027 | 1/A2/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8BHF_028 | 1/A2/1761:1771 | No text annotation | ||
| HL_8BHF_029 | 1/A2/1816:1823 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_8BHF_030 | 1/A2/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8BHF_031 | 1/A2/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8BHF_032 | 1/A2/1973:1993 | No text annotation | ||
| HL_8BHF_033 | 1/A2/2006:2013 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_8BHF_035 | 1/A2/2320:2325 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8BHF_036 | 1/A2/2379:2387 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8BHF_037 | 1/A2/2423:2429 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_8BHF_038 | 1/A2/2461:2466 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8BHF_039 | 1/A2/2490:2494 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8BHF_040 | 1/A2/2526:2535 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8BHF_041 | 1/A2/2564:2569 | GNRA | geometric HL_2ZZM_003 HL_37824.8 | |
| HL_8BHF_042 | 1/A2/2581:2586 | GNRA | homologous HL_5TBW_036 NA | |
| HL_8BHF_043 | 1/A2/2627:2635 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8BHF_044 | 1/A2/2667:2673 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8BHF_045 | 1/A2/2708:2713 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_8BHF_046 | 1/A2/2741:2745 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8BHF_047 | 1/A2/2795:2802 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8BHF_048 | 1/A2/2813:2819 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8BHF_049 | 1/A2/2875:2880 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_8BHF_051 | 1/A2/3609:3613 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8BHF_052 | 1/A2/3634:3644 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8BHF_053 | 1/A2/3663:3669 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8BHF_054 | 1/A2/3719:3724 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8BHF_055 | 1/A2/3752:3762 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8BHF_056 | 1/A2/3791:3799 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8BHF_057 | 1/A2/3868:3877 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8BHF_060 | 1/A2/4179:4187 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8BHF_061 | 1/A2/4196:4208 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8BHF_062 | 1/A2/4236:4244 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8BHF_063 | 1/A2/4256:4263 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_8BHF_064 | 1/A2/4287:4295 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8BHF_065 | 1/A2/4307:4312 | GNRA | homologous HL_5TBW_059 NA | |
| HL_8BHF_066 | 1/A2/4338:4348 | No text annotation | geometric HL_4V83_139 NA | |
| HL_8BHF_067 | 1/A2/4403:4411 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8BHF_068 | 1/A2/4460:4467 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8BHF_069 | 1/A2/4483:4489 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_8BHF_070 | 1/A2/4526:4531 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8BHF_071 | 1/A2/4589:4594 | GNRA | geometric HL_4V9F_066 HL_37824.8 | |
| HL_8BHF_072 | 1/A2/4632:4637 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8BHF_073 | 1/A2/4674:4688 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8BHF_075 | 1/A2/4888:4897 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8BHF_076 | 1/A2/4957:4965 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8BHF_078 | 1/A3/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8BHF_079 | 1/A3/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_8BHF_080 | 1/A3/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8BHF_081 | 1/A3/197:202 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_8BHF_082 | 1/A3/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_8BHF_083 | 1/A3/322:329 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8BHF_084 | 1/A3/377:387 | No text annotation | ||
| HL_8BHF_085 | 1/A3/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8BHF_086 | 1/A3/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8BHF_087 | 1/A3/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_8BHF_088 | 1/A3/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8BHF_089 | 1/A3/539:544 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
| HL_8BHF_090 | 1/A3/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_8BHF_091 | 1/A3/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8BHF_092 | 1/A3/751:792 | No text annotation | ||
| HL_8BHF_093 | 1/A3/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8BHF_094 | 1/A3/833:841 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_8BHF_119 | 1/A3/885:901 | No text annotation | ||
| HL_8BHF_096 | 1/A3/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8BHF_097 | 1/A3/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_8BHF_098 | 1/A3/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8BHF_099 | 1/A3/1114:1119 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_8BHF_100 | 1/A3/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_8BHF_101 | 1/A3/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_8BHF_102 | 1/A3/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_8BHF_103 | 1/A3/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_8BHF_104 | 1/A3/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_8BHF_105 | 1/A3/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8BHF_106 | 1/A3/1416:1424 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_8BHF_107 | 1/A3/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_8BHF_108 | 1/A3/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_8BHF_109 | 1/A3/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_8BHF_110 | 1/A3/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8BHF_111 | 1/A3/1759:1773 | No text annotation | ||
| HL_8BHF_112 | 1/A3/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_8BHF_120 | 1/B2/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8BHF_113 | 1/B2/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8BHF_114 | 1/B2/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8BHF_115 | 1/C2/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_8BHF_117 | 1/C2/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8BHF_118 | 1/C2/121:129 | Purine riboswitch | geometric HL_4LX6_002 HL_31585.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8BHF_015 | No text annotation | ||
| HL_8BHF_017 | No text annotation | ||
| HL_8BHF_019 | No text annotation | ||
| HL_8BHF_022 | Pseudoknot geometry | ||
| HL_8BHF_034 | No text annotation | ||
| HL_8BHF_050 | Externally structured | ||
| HL_8BHF_058 | No text annotation | ||
| HL_8BHF_059 | No text annotation | ||
| HL_8BHF_074 | No text annotation | ||
| HL_8BHF_077 | Mini UNCG | ||
| HL_8BHF_095 | No text annotation | ||
| HL_8BHF_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8BHF_002 | 1/21/49:52, 1/21/62:65 | No text annotation | homologous IL_3AMU_001 NA | |
| IL_8BHF_003 | 1/A2/6:7, 1/C2/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8BHF_004 | 1/A2/12:14, 1/C2/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8BHF_005 | 1/A2/16:18, 1/C2/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_8BHF_006 | 1/A2/26:27, 1/A2/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8BHF_007 | 1/A2/30:37, 1/A2/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_8BHF_008 | 1/A2/81:88, 1/A2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8BHF_009 | 1/A2/118:121, 1/A2/152:153 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_8BHF_281 | 1/A2/118:122, 1/A2/147:153 | No text annotation | ||
| IL_8BHF_010 | 1/A2/121:122, 1/A2/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8BHF_011 | 1/A2/125:126, 1/A2/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8BHF_012 | 1/A2/168:173, 1/A2/263:267 | No text annotation | ||
| IL_8BHF_013 | 1/A2/180:182, 1/A2/255:256 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_8BHF_015 | 1/A2/195:196, 1/A2/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8BHF_016 | 1/A2/199:201, 1/A2/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8BHF_017 | 1/A2/339:342, 1/C2/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_8BHF_018 | 1/A2/348:350, 1/C2/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8BHF_019 | 1/A2/387:390, 1/A2/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_8BHF_020 | 1/A2/415:421, 1/C2/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8BHF_021 | 1/A2/443:446, 1/A2/1298:1302 | No text annotation | geometric IL_4PHY_003 IL_99358.1 | |
| IL_8BHF_022 | 1/A2/448:450, 1/A2/1295:1296 | No text annotation | ||
| IL_8BHF_023 | 1/A2/459:460, 1/A2/696:698 | Single bulged C | geometric IL_1S03_002 IL_61258.15 | |
| IL_8BHF_024 | 1/A2/462:464, 1/A2/692:694 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 | |
| IL_8BHF_025 | 1/A2/466:472, 1/A2/683:690 | No text annotation | ||
| IL_8BHF_026 | 1/A2/480:483, 1/A2/673:675 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_8BHF_027 | 1/A2/483:486, 1/A2/672:673 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8BHF_028 | 1/A2/488:489, 1/A2/666:670 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_8BHF_029 | 1/A2/492:494, 1/A2/662:663 | Single bulged U | geometric IL_4WF9_030 IL_89505.4 | |
| IL_8BHF_030 | 1/A2/498:500, 1/A2/657:658 | No text annotation | ||
| IL_8BHF_031 | 1/A2/509:511, 1/A2/650:651 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_8BHF_032 | 1/A2/552:555, 1/A2/639:642 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_8BHF_033 | 1/A2/710:711, 1/A2/1284:1286 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_8BHF_034 | 1/A2/724:725, 1/A2/943:946 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8BHF_035 | 1/A2/728:732, 1/A2/939:940 | No text annotation | ||
| IL_8BHF_036 | 1/A2/733:736, 1/A2/928:938 | No text annotation | ||
| IL_8BHF_037 | 1/A2/738:741, 1/A2/923:926 | No text annotation | ||
| IL_8BHF_282 | 1/A2/738:742, 1/A2/920:926 | No text annotation | ||
| IL_8BHF_038 | 1/A2/741:742, 1/A2/920:923 | No text annotation | ||
| IL_8BHF_039 | 1/A2/742:745, 1/A2/919:920 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_8BHF_041 | 1/A2/878:880, 1/A2/905:906 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_8BHF_042 | 1/A2/880:881, 1/A2/903:905 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8BHF_043 | 1/A2/980:982, 1/A2/1273:1276 | No text annotation | ||
| IL_8BHF_044 | 1/A2/982:984, 1/A2/1271:1273 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_8BHF_045 | 1/A2/1072:1074, 1/A2/1232:1234 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_8BHF_047 | 1/A2/1080:1082, 1/A2/1211:1215 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_8BHF_048 | 1/A2/1084:1085, 1/A2/1207:1209 | Single bulged C | geometric IL_3SN2_001 IL_61258.15 | |
| IL_8BHF_049 | 1/A2/1095:1096, 1/A2/1195:1197 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_8BHF_051 | 1/A2/1171:1173, 1/A2/1184:1186 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_8BHF_052 | 1/A2/1355:1358, 1/A2/1377:1380 | No text annotation | ||
| IL_8BHF_283 | 1/A2/1355:1359, 1/A2/1374:1380 | No text annotation | ||
| IL_8BHF_053 | 1/A2/1358:1359, 1/A2/1374:1377 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_8BHF_055 | 1/A2/1425:1429, 1/A2/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_8BHF_056 | 1/A2/1431:1434, 1/A2/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_8BHF_057 | 1/A2/1467:1468, 1/A2/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8BHF_058 | 1/A2/1474:1476, 1/A2/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8BHF_059 | 1/A2/1520:1522, 1/A2/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8BHF_060 | 1/A2/1522:1526, 1/A2/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_8BHF_061 | 1/A2/1550:1551, 1/A2/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8BHF_062 | 1/A2/1551:1555, 1/A2/1572:1576 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_8BHF_063 | 1/A2/1586:1589, 1/A2/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8BHF_064 | 1/A2/1590:1592, 1/A2/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8BHF_065 | 1/A2/1624:1626, 1/A2/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_8BHF_066 | 1/A2/1671:1673, 1/A2/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8BHF_067 | 1/A2/1686:1688, 1/A2/1848:1851 | No text annotation | ||
| IL_8BHF_069 | 1/A2/1723:1725, 1/A2/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8BHF_070 | 1/A2/1732:1737, 1/A2/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8BHF_071 | 1/A2/1737:1738, 1/A2/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_8BHF_072 | 1/A2/1739:1744, 1/A2/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8BHF_284 | 1/A2/1746:1749, 1/A2/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8BHF_074 | 1/A2/1749:1751, 1/A2/1779:1781 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_8BHF_075 | 1/A2/1753:1756, 1/A2/1776:1777 | Major groove platform | geometric IL_7A0S_073 IL_48076.6 | |
| IL_8BHF_077 | 1/A2/1814:1816, 1/A2/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8BHF_078 | 1/A2/1858:1860, 1/A2/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_8BHF_080 | 1/A2/1905:1909, 1/A2/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8BHF_081 | 1/A2/1911:1918, 1/A2/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_8BHF_082 | 1/A2/1918:1920, 1/A2/2063:2064 | No text annotation | ||
| IL_8BHF_083 | 1/A2/1920:1922, 1/A2/2062:2063 | No text annotation | ||
| IL_8BHF_084 | 1/A2/1926:1933, 1/A2/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_8BHF_085 | 1/A2/1933:1944, 1/A2/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8BHF_086 | 1/A2/1946:1948, 1/A2/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8BHF_087 | 1/A2/1957:1965, 1/A2/2022:2026 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8BHF_089 | 1/A2/2001:2005, 1/A2/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_8BHF_090 | 1/A2/2083:2085, 1/A2/2275:2276 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_8BHF_091 | 1/A2/2293:2295, 1/A2/2345:2348 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8BHF_092 | 1/A2/2302:2304, 1/A2/2337:2338 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8BHF_093 | 1/A2/2305:2312, 1/A2/2332:2336 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8BHF_094 | 1/A2/2315:2317, 1/A2/2328:2329 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8BHF_095 | 1/A2/2361:2367, 1/A2/3853:3858 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_8BHF_096 | 1/A2/2418:2422, 1/A2/2430:2432 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_8BHF_097 | 1/A2/2449:2453, 1/A2/2512:2517 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8BHF_098 | 1/A2/2480:2482, 1/A2/2502:2503 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_8BHF_100 | 1/A2/2545:2550, 1/A2/2775:2777 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_8BHF_101 | 1/A2/2552:2553, 1/A2/2771:2773 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_8BHF_102 | 1/A2/2592:2596, 1/A2/2755:2759 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_8BHF_103 | 1/A2/2616:2617, 1/A2/2727:2729 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_8BHF_104 | 1/A2/2617:2618, 1/A2/2725:2727 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_8BHF_105 | 1/A2/2649:2651, 1/A2/2688:2691 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_8BHF_106 | 1/A2/2654:2656, 1/A2/2684:2685 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_8BHF_107 | 1/A2/2659:2665, 1/A2/2675:2681 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8BHF_108 | 1/A2/2707:2708, 1/A2/2713:2715 | No text annotation | ||
| IL_8BHF_109 | 1/A2/2835:2841, 1/A2/3845:3848 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_8BHF_110 | 1/A2/2847:2849, 1/A2/3837:3839 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8BHF_111 | 1/A2/2850:2853, 1/A2/3835:3836 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_8BHF_285 | 1/A2/2850:2858, 1/A2/3832:3836 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8BHF_112 | 1/A2/2853:2858, 1/A2/3832:3835 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8BHF_113 | 1/A2/2870:2875, 1/A2/2880:2886 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8BHF_114 | 1/A2/2892:2894, 1/A2/3605:3607 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8BHF_115 | 1/A2/2899:2900, 1/A2/3597:3600 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8BHF_116 | 1/A2/3627:3628, 1/A2/3822:3824 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8BHF_117 | 1/A2/3655:3660, 1/A2/3672:3679 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8BHF_118 | 1/A2/3695:3698, 1/A2/3744:3745 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8BHF_119 | 1/A2/3699:3700, 1/A2/3740:3743 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_8BHF_120 | 1/A2/3703:3705, 1/A2/3736:3737 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8BHF_286 | 1/A2/3703:3709, 1/A2/3734:3737 | No text annotation | ||
| IL_8BHF_121 | 1/A2/3705:3709, 1/A2/3734:3736 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_8BHF_122 | 1/A2/3710:3716, 1/A2/3727:3733 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8BHF_123 | 1/A2/3775:3776, 1/A2/3806:3809 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_8BHF_124 | 1/A2/3776:3787, 1/A2/3803:3806 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_8BHF_125 | 1/A2/3890:3893, 1/A2/4549:4551 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8BHF_126 | 1/A2/3895:3897, 1/A2/4544:4547 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8BHF_127 | 1/A2/3908:3910, 1/A2/4374:4375 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_8BHF_128 | 1/A2/3911:3912, 1/A2/4370:4373 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8BHF_129 | 1/A2/3922:3924, 1/A2/4167:4170 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8BHF_130 | 1/A2/3942:3947, 1/A2/4054:4060 | No text annotation | ||
| IL_8BHF_298 | 1/A2/3950:3961, 1/A2/4049:4051 | No text annotation | ||
| IL_8BHF_299 | 1/A2/3965:3970, 1/A2/4030:4045 | No text annotation | ||
| IL_8BHF_135 | 1/A2/4076:4082, 1/A2/4147:4150 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8BHF_136 | 1/A2/4089:4094, 1/A2/4101:4106 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_8BHF_138 | 1/A2/4177:4178, 1/A2/4188:4190 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8BHF_139 | 1/A2/4229:4231, 1/A2/4249:4253 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8BHF_140 | 1/A2/4277:4279, 1/A2/4303:4304 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_8BHF_141 | 1/A2/4281:4284, 1/A2/4298:4301 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_8BHF_142 | 1/A2/4333:4336, 1/A2/4350:4351 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8BHF_143 | 1/A2/4386:4387, 1/A2/4428:4430 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_8BHF_288 | 1/A2/4386:4389, 1/A2/4426:4430 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8BHF_144 | 1/A2/4387:4389, 1/A2/4426:4428 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_8BHF_145 | 1/A2/4389:4391, 1/A2/4425:4426 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8BHF_146 | 1/A2/4391:4393, 1/A2/4421:4425 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_8BHF_147 | 1/A2/4398:4402, 1/A2/4412:4416 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8BHF_148 | 1/A2/4439:4440, 1/A2/4512:4514 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8BHF_149 | 1/A2/4442:4444, 1/A2/4506:4510 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_8BHF_150 | 1/A2/4444:4445, 1/A2/4503:4506 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8BHF_151 | 1/A2/4452:4454, 1/A2/4475:4477 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_8BHF_289 | 1/A2/4452:4456, 1/A2/4471:4477 | No text annotation | ||
| IL_8BHF_152 | 1/A2/4454:4456, 1/A2/4471:4475 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_8BHF_153 | 1/A2/4481:4483, 1/A2/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8BHF_154 | 1/A2/4523:4524, 1/A2/4533:4535 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_8BHF_155 | 1/A2/4566:4568, 1/A2/4707:4709 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_8BHF_156 | 1/A2/4568:4571, 1/A2/4703:4707 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_8BHF_157 | 1/A2/4576:4578, 1/A2/4604:4606 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8BHF_158 | 1/A2/4582:4589, 1/A2/4594:4600 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8BHF_159 | 1/A2/4610:4615, 1/A2/4655:4659 | No text annotation | ||
| IL_8BHF_160 | 1/A2/4618:4623, 1/A2/4648:4652 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_8BHF_161 | 1/A2/4624:4626, 1/A2/4645:4647 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_8BHF_162 | 1/A2/4627:4628, 1/A2/4641:4644 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8BHF_163 | 1/A2/4666:4671, 1/A2/4691:4696 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_8BHF_165 | 1/A2/4729:4732, 1/A2/4936:4939 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8BHF_166 | 1/A2/4742:4752, 1/A2/4850:4859 | No text annotation | ||
| IL_8BHF_167 | 1/A2/4755:4759, 1/A2/4844:4847 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_8BHF_168 | 1/A2/4867:4870, 1/A2/4913:4916 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
| IL_8BHF_169 | 1/A2/4872:4878, 1/A2/4906:4911 | No text annotation | ||
| IL_8BHF_171 | 1/A2/4954:4957, 1/A2/4965:4968 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8BHF_172 | 1/A2/4974:4976, 1/A2/5039:5041 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_8BHF_173 | 1/A2/4978:4979, 1/A2/5035:5037 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_8BHF_174 | 1/A2/4982:4984, 1/A2/5027:5032 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_8BHF_175 | 1/A2/4985:4991, 1/A2/5021:5026 | No text annotation | ||
| IL_8BHF_176 | 1/A2/4994:4996, 1/A2/5017:5018 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
| IL_8BHF_177 | 1/A2/4996:4999, 1/A2/5014:5017 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8BHF_178 | 1/A3/23:25, 1/A3/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_8BHF_179 | 1/A3/34:36, 1/A3/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_8BHF_180 | 1/A3/37:40, 1/A3/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_8BHF_181 | 1/A3/41:47, 1/A3/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8BHF_182 | 1/A3/49:51, 1/A3/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8BHF_183 | 1/A3/57:62, 1/A3/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8BHF_290 | 1/A3/63:68, 1/A3/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_8BHF_185 | 1/A3/108:110, 1/A3/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_28037.2 | |
| IL_8BHF_186 | 1/A3/110:112, 1/A3/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_8BHF_187 | 1/A3/112:115, 1/A3/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_8BHF_188 | 1/A3/116:121, 1/A3/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8BHF_189 | 1/A3/130:144, 1/A3/175:182 | No text annotation | ||
| IL_8BHF_190 | 1/A3/145:151, 1/A3/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_8BHF_191 | 1/A3/152:154, 1/A3/164:166 | Isolated cWH basepair | geometric IL_4KQ0_004 IL_10167.6 | |
| IL_8BHF_192 | 1/A3/188:192, 1/A3/207:211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_17948.2 | |
| IL_8BHF_194 | 1/A3/216:219, 1/A3/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_8BHF_196 | 1/A3/223:288, 1/A3/295:298 | No text annotation | ||
| IL_8BHF_197 | 1/A3/312:314, 1/A3/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8BHF_291 | 1/A3/317:319, 1/A3/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_8BHF_199 | 1/A3/359:364, 1/A3/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8BHF_200 | 1/A3/366:371, 1/A3/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_8BHF_201 | 1/A3/411:413, 1/A3/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8BHF_202 | 1/A3/437:439, 1/A3/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8BHF_203 | 1/A3/459:461, 1/A3/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_8BHF_204 | 1/A3/487:489, 1/A3/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8BHF_205 | 1/A3/491:495, 1/A3/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8BHF_206 | 1/A3/495:496, 1/A3/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_8BHF_207 | 1/A3/529:530, 1/A3/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_8BHF_208 | 1/A3/535:537, 1/A3/546:549 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_8BHF_209 | 1/A3/563:565, 1/A3/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8BHF_210 | 1/A3/566:569, 1/A3/581:584 | Tandem non-canonical cWW pairs | geometric IL_402D_001 IL_77658.1 | |
| IL_8BHF_211 | 1/A3/599:608, 1/A3/635:637 | No text annotation | ||
| IL_8BHF_212 | 1/A3/611:617, 1/A3/624:632 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8BHF_213 | 1/A3/663:665, 1/A3/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_8BHF_214 | 1/A3/665:671, 1/A3/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8BHF_215 | 1/A3/673:675, 1/A3/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8BHF_216 | 1/A3/676:680, 1/A3/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8BHF_217 | 1/A3/692:695, 1/A3/731:734 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_8BHF_293 | 1/A3/745:749, 1/A3/794:796 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_8BHF_219 | 1/A3/802:803, 1/A3/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8BHF_220 | 1/A3/805:807, 1/A3/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8BHF_221 | 1/A3/807:815, 1/A3/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_8BHF_222 | 1/A3/874:876, 1/A3/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_8BHF_223 | 1/A3/877:879, 1/A3/907:909 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_87907.2 | |
| IL_8BHF_224 | 1/A3/922:923, 1/A3/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8BHF_225 | 1/A3/925:927, 1/A3/1014:1017 | Single bulged G, near cWW | geometric IL_6CZR_128 NA | |
| IL_8BHF_226 | 1/A3/928:931, 1/A3/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8BHF_227 | 1/A3/931:935, 1/A3/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8BHF_228 | 1/A3/942:945, 1/A3/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8BHF_229 | 1/A3/952:956, 1/A3/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_8BHF_230 | 1/A3/1042:1047, 1/A3/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_8BHF_231 | 1/A3/1047:1051, 1/A3/1067:1071 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_8BHF_232 | 1/A3/1091:1093, 1/A3/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.1 | |
| IL_8BHF_233 | 1/A3/1098:1101, 1/A3/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8BHF_294 | 1/A3/1098:1103, 1/A3/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_8BHF_234 | 1/A3/1101:1103, 1/A3/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_8BHF_235 | 1/A3/1108:1110, 1/A3/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8BHF_236 | 1/A3/1168:1175, 1/A3/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8BHF_237 | 1/A3/1203:1204, 1/A3/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8BHF_238 | 1/A3/1206:1208, 1/A3/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_8BHF_239 | 1/A3/1214:1217, 1/A3/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_8BHF_240 | 1/A3/1230:1232, 1/A3/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8BHF_241 | 1/A3/1235:1236, 1/A3/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8BHF_242 | 1/A3/1270:1272, 1/A3/1510:1512 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_8BHF_243 | 1/A3/1281:1287, 1/A3/1314:1316 | No text annotation | ||
| IL_8BHF_295 | 1/A3/1281:1290, 1/A3/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_8BHF_244 | 1/A3/1287:1290, 1/A3/1309:1314 | No text annotation | ||
| IL_8BHF_245 | 1/A3/1291:1294, 1/A3/1305:1308 | No text annotation | ||
| IL_8BHF_246 | 1/A3/1325:1327, 1/A3/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_8BHF_247 | 1/A3/1329:1333, 1/A3/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8BHF_296 | 1/A3/1329:1335, 1/A3/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8BHF_248 | 1/A3/1333:1335, 1/A3/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_8BHF_249 | 1/A3/1337:1338, 1/A3/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_8BHF_250 | 1/A3/1347:1349, 1/A3/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_8BHF_251 | 1/A3/1363:1365, 1/A3/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_8BHF_252 | 1/A3/1395:1399, 1/A3/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_8BHF_253 | 1/A3/1402:1405, 1/A3/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8BHF_254 | 1/A3/1412:1413, 1/A3/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_8BHF_255 | 1/A3/1537:1539, 1/A3/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_8BHF_297 | 1/A3/1541:1550, 1/A3/1582:1592 | No text annotation | ||
| IL_8BHF_256 | 1/A3/1550:1558, 1/A3/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_8BHF_257 | 1/A3/1560:1562, 1/A3/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_8BHF_258 | 1/A3/1604:1610, 1/A3/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_8BHF_259 | 1/A3/1700:1702, 1/A3/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_8BHF_260 | 1/A3/1702:1705, 1/A3/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8BHF_261 | 1/A3/1706:1708, 1/A3/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_8BHF_262 | 1/A3/1708:1711, 1/A3/1822:1826 | No text annotation | geometric IL_1DUQ_001 IL_25872.4 | |
| IL_8BHF_263 | 1/A3/1714:1716, 1/A3/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8BHF_264 | 1/A3/1717:1720, 1/A3/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8BHF_265 | 1/A3/1720:1722, 1/A3/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_8BHF_266 | 1/A3/1729:1731, 1/A3/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8BHF_267 | 1/A3/1733:1736, 1/A3/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8BHF_268 | 1/A3/1739:1741, 1/A3/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_8BHF_269 | 1/A3/1742:1746, 1/A3/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_8BHF_270 | 1/A3/1750:1751, 1/A3/1782:1784 | No text annotation | ||
| IL_8BHF_300 | 1/A3/1751:1752, 1/A3/1780:1782 | No text annotation | ||
| IL_8BHF_273 | 1/B2/15:16, 1/B2/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8BHF_274 | 1/B2/21:27, 1/B2/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_8BHF_275 | 1/B2/28:29, 1/B2/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8BHF_276 | 1/B2/32:36, 1/B2/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8BHF_277 | 1/B2/71:78, 1/B2/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8BHF_278 | 1/B2/79:81, 1/B2/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_8BHF_279 | 1/B2/82:85, 1/B2/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8BHF_280 | 1/C2/64:66, 1/C2/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8BHF_001 | No text annotation | ||
| IL_8BHF_014 | No text annotation | ||
| IL_8BHF_040 | No text annotation | ||
| IL_8BHF_046 | No text annotation | ||
| IL_8BHF_050 | No text annotation | ||
| IL_8BHF_054 | No text annotation | ||
| IL_8BHF_068 | No text annotation | ||
| IL_8BHF_073 | No text annotation | ||
| IL_8BHF_076 | Isolated non-canonical cWW pair | ||
| IL_8BHF_079 | No text annotation | ||
| IL_8BHF_088 | Isolated non-canonical cWW pair | ||
| IL_8BHF_099 | Isolated non-canonical cWW pair | ||
| IL_8BHF_131 | Isolated non-canonical cWW pair | ||
| IL_8BHF_132 | Partly complementary | ||
| IL_8BHF_133 | Isolated non-canonical cWW pair | ||
| IL_8BHF_287 | No text annotation | ||
| IL_8BHF_134 | No text annotation | ||
| IL_8BHF_137 | Isolated non-canonical cWW pair | ||
| IL_8BHF_164 | No text annotation | ||
| IL_8BHF_170 | Decoding loop related | ||
| IL_8BHF_184 | No text annotation | ||
| IL_8BHF_193 | Isolated non-canonical cWW pair | ||
| IL_8BHF_195 | Isolated non-canonical cWW pair | ||
| IL_8BHF_198 | No text annotation | ||
| IL_8BHF_292 | Triple non-canonical cWW pairs | ||
| IL_8BHF_218 | No text annotation | ||
| IL_8BHF_271 | Other IL | ||
| IL_8BHF_272 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8BHF_001 | 1/A2/112:116, 1/A2/155:160, 1/A2/275:278 | No text annotation | ||
| J3_8BHF_024 | 1/A2/196:199, 1/A2/215:228, 1/A2/240:244 | No text annotation | ||
| J3_8BHF_025 | 1/A2/351:367, 1/A2/374:379, 1/C2/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8BHF_026 | 1/A2/380:387, 1/A2/414:415, 1/C2/19:20 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_8BHF_027 | 1/A2/380:390, 1/A2/401:415, 1/C2/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8BHF_028 | 1/A2/451:455, 1/A2/702:706, 1/A2/1290:1294 | No text annotation | ||
| J3_8BHF_003 | 1/A2/1531:1537, 1/A2/1622:1624, 1/A2/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8BHF_004 | 1/A2/1545:1548, 1/A2/1580:1584, 1/A2/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_8BHF_029 | 1/A2/1726:1727, 1/A2/1802:1806, 1/A2/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8BHF_005 | 1/A2/1969:1971, 1/A2/1995:2001, 1/A2/2016:2018 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_8BHF_030 | 1/A2/1969:1971, 1/A2/1995:2005, 1/A2/2014:2018 | No text annotation | ||
| J3_8BHF_006 | 1/A2/2396:2402, 1/A2/2808:2810, 1/A2/2822:2825 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8BHF_007 | 1/A2/2405:2408, 1/A2/2788:2794, 1/A2/2803:2805 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8BHF_031 | 1/A2/2443:2448, 1/A2/2518:2522, 1/A2/2539:2540 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8BHF_032 | 1/A2/2454:2459, 1/A2/2468:2479, 1/A2/2504:2511 | No text annotation | ||
| J3_8BHF_008 | 1/A2/2554:2558, 1/A2/2575:2578, 1/A2/2760:2770 | No text annotation | ||
| J3_8BHF_033 | 1/A2/2578:2579, 1/A2/2588:2592, 1/A2/2759:2760 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8BHF_034 | 1/A2/2601:2605, 1/A2/2740:2741, 1/A2/2745:2750 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_8BHF_009 | 1/A2/3932:3934, 1/A2/4068:4072, 1/A2/4154:4159 | No text annotation | ||
| J3_8BHF_010 | 1/A2/4085:4088, 1/A2/4107:4122, 1/A2/4141:4144 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_8BHF_035 | 1/A2/4214:4216, 1/A2/4317:4328, 1/A2/4356:4361 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8BHF_011 | 1/A2/4227:4229, 1/A2/4253:4255, 1/A2/4264:4269 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8BHF_012 | 1/A2/4449:4452, 1/A2/4477:4479, 1/A2/4493:4499 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_8BHF_036 | 1/A2/4735:4740, 1/A2/4861:4865, 1/A2/4918:4933 | No text annotation | ||
| J3_8BHF_013 | 1/A2/4952:4954, 1/A2/4968:4973, 1/A2/5042:5045 | No text annotation | ||
| J3_8BHF_037 | 1/A3/40:41, 1/A3/481:487, 1/A3/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8BHF_038 | 1/A3/40:47, 1/A3/479:487, 1/A3/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8BHF_044 | 1/A3/682:684, 1/A3/918:922, 1/A3/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_56052.5 | |
| J3_8BHF_045 | 1/A3/682:684, 1/A3/918:923, 1/A3/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8BHF_014 | 1/A3/816:819, 1/A3/829:831, 1/A3/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8BHF_015 | 1/A3/938:941, 1/A3/985:993, 1/A3/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8BHF_016 | 1/A3/1094:1096, 1/A3/1136:1140, 1/A3/1147:1151 | No text annotation | ||
| J3_8BHF_017 | 1/A3/1218:1221, 1/A3/1645:1651, 1/A3/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8BHF_018 | 1/A3/1225:1228, 1/A3/1530:1532, 1/A3/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8BHF_019 | 1/A3/1237:1244, 1/A3/1255:1266, 1/A3/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8BHF_020 | 1/A3/1272:1277, 1/A3/1320:1324, 1/A3/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_8BHF_021 | 1/A3/1340:1345, 1/A3/1384:1389, 1/A3/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_8BHF_041 | 1/A3/1350:1351, 1/A3/1360:1363, 1/A3/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8BHF_022 | 1/A3/1391:1395, 1/A3/1450:1456, 1/A3/1470:1479 | No text annotation | ||
| J3_8BHF_023 | 1/A3/1532:1536, 1/A3/1597:1604, 1/A3/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_8BHF_042 | 1/B2/9:14, 1/B2/65:66, 1/B2/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8BHF_043 | 1/C2/44:45, 1/C2/58:64, 1/C2/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_8BHF_001 | 1/21/7:10, 1/21/25:27, 1/21/43:49, 1/21/65:66 | tRNA junction | homologous J4_5AXM_001 J4_70449.29 | |
| J4_8BHF_002 | 1/A2/111:112, 1/A2/278:283, 1/A2/304:310, 1/A2/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8BHF_003 | 1/A2/196:199, 1/A2/215:222, 1/A2/226:228, 1/A2/240:244 | No text annotation | ||
| J4_8BHF_004 | 1/A2/713:714, 1/A2/956:963, 1/A2/971:982, 1/A2/1273:1282 | No text annotation | ||
| J4_8BHF_005 | 1/A2/2368:2374, 1/A2/2392:2394, 1/A2/2827:2832, 1/A2/3851:3852 | No text annotation | ||
| J4_8BHF_006 | 1/A2/2409:2413, 1/A2/2437:2442, 1/A2/2541:2542, 1/A2/2780:2787 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8BHF_007 | 1/A2/2621:2622, 1/A2/2640:2645, 1/A2/2695:2701, 1/A2/2721:2722 | No text annotation | ||
| J4_8BHF_008 | 1/A2/3629:3633, 1/A2/3645:3649, 1/A2/3685:3689, 1/A2/3816:3821 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_8BHF_009 | 1/A2/3691:3693, 1/A2/3747:3748, 1/A2/3766:3775, 1/A2/3809:3814 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8BHF_010 | 1/A2/4217:4221, 1/A2/4275:4277, 1/A2/4304:4305, 1/A2/4314:4316 | No text annotation | ||
| J4_8BHF_011 | 1/A2/4217:4221, 1/A2/4275:4279, 1/A2/4303:4305, 1/A2/4314:4316 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8BHF_012 | 1/A2/4573:4576, 1/A2/4606:4607, 1/A2/4662:4664, 1/A2/4698:4701 | No text annotation | ||
| J4_8BHF_013 | 1/A3/98:106, 1/A3/355:357, 1/A3/405:409, 1/A3/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8BHF_014 | 1/A3/671:673, 1/A3/1032:1037, 1/A3/1078:1089, 1/A3/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8BHF_001 | 1/A2/19:21, 1/C2/35:42, 1/C2/101:106, 1/C2/113:114, 1/C2/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_8BHF_002 | 1/A2/1333:1338, 1/A2/1516:1519, 1/A2/1658:1661, 1/A2/2291:2293, 1/A2/2348:2354 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_8BHF_003 | 1/A2/2858:2866, 1/A2/2890:2891, 1/A2/3608:3609, 1/A2/3613:3621, 1/A2/3830:3832 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8BHF_004 | 1/A2/3898:3905, 1/A2/4378:4386, 1/A2/4430:4439, 1/A2/4514:4520, 1/A2/4538:4543 | No text annotation | ||
| J5_8BHF_005 | 1/A2/3915:3918, 1/A2/4174:4177, 1/A2/4190:4191, 1/A2/4213:4214, 1/A2/4361:4367 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_8BHF_006 | 1/A3/30:34, 1/A3/521:527, 1/A3/558:563, 1/A3/592:595, 1/A3/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8BHF_007 | 1/A3/30:34, 1/A3/521:527, 1/A3/558:565, 1/A3/585:595, 1/A3/641:644 | No text annotation | ||
| J5_8BHF_008 | 1/A3/53:56, 1/A3/89:96, 1/A3/434:436, 1/A3/457:459, 1/A3/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8BHF_009 | 1/A3/123:129, 1/A3/183:185, 1/A3/214:215, 1/A3/310:312, 1/A3/337:341 | No text annotation | ||
| J5_8BHF_010 | 1/A3/685:690, 1/A3/736:744, 1/A3/797:800, 1/A3/865:874, 1/A3/912:917 | No text annotation | ||
| J6_8BHF_001 | 1/A2/21:26, 1/A2/57:67, 1/A2/74:78, 1/A2/105:109, 1/A2/332:339, 1/C2/33:35 | No text annotation | ||
| J6_8BHF_002 | 1/A2/1350:1353, 1/A2/1382:1386, 1/A2/1393:1397, 1/A2/1418:1421, 1/A2/1464:1466, 1/A2/1499:1504 | No text annotation | ||
| J6_8BHF_003 | 1/A2/3915:3918, 1/A2/4174:4177, 1/A2/4190:4191, 1/A2/4213:4216, 1/A2/4317:4328, 1/A2/4356:4367 | No text annotation | ||
| J7_8BHF_001 | 1/A2/1666:1671, 1/A2/1684:1685, 1/A2/1852:1855, 1/A2/1879:1884, 1/A2/1895:1899, 1/A2/2077:2078, 1/A2/2281:2286 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8BHF_002 | No text annotation | ||
| J3_8BHF_039 | No text annotation | ||
| J3_8BHF_040 | No text annotation |
Coloring options: