HL_8BHF_002
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_002 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1183
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8BHF|1|21|A|31
8BHF|1|21|C|32
8BHF|1|21|U|33
8BHF|1|21|U|34
8BHF|1|21|A|35
8BHF|1|21|A|36
8BHF|1|21|G|37
8BHF|1|21|A|38
8BHF|1|21|U|39
Current chains
- Chain 21
- P-site tRNA
Nearby chains
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q3
- 40S ribosomal protein S15
- Chain R3
- Ribosomal protein S16
- Chain m1
- mRNA
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