HL_8BHF_003
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCCGCGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_003 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1177
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
8BHF|1|21|G|53
8BHF|1|21|U|54
8BHF|1|21|C|55
8BHF|1|21|C|56
8BHF|1|21|G|57
8BHF|1|21|C|58
8BHF|1|21|G|59
8BHF|1|21|U|60
8BHF|1|21|C|61
Current chains
- Chain 21
- P-site tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain b1
- Ribosomal protein L36a like
- Chain n1
- CCR4-NOT transcription complex subunit 3
- Chain s3
- 60S ribosomal protein L11
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