HL_8BHF_008

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8BHF|1|A2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3306

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8BHF|1|A2|U|204
8BHF|1|A2|C|205
8BHF|1|A2|U|206
8BHF|1|A2|G|207
8BHF|1|A2|A|208
8BHF|1|A2|U|209
8BHF|1|A2|C|210
8BHF|1|A2|G|211

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain L1

Ribosomal protein L26

Chain R1

Ribosomal protein L32