HL_8BHF_012
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 8BHF|1|A2|G|315, 8BHF|1|A2|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_012 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1585
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8BHF|1|A2|G|314
8BHF|1|A2|G|315
8BHF|1|A2|U|316
8BHF|1|A2|A|317
8BHF|1|A2|A|318
8BHF|1|A2|A|319
8BHF|1|A2|C|320
8BHF|1|A2|U|321
8BHF|1|A2|C|322
8BHF|1|A2|C|323
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain N1
- 60S ribosomal protein L27a
- Chain V1
- 60S ribosomal protein L36
- Chain b1
- Ribosomal protein L36a like
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