HL_8BHF_013

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_013 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0767

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A2|C|368
8BHF|1|A2|G|369
8BHF|1|A2|U|370
8BHF|1|A2|A|371
8BHF|1|A2|A|372
8BHF|1|A2|G|373

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain W1

Ribosomal protein L37

Chain Y1

60S ribosomal protein L39-like

Chain l3

60S ribosomal protein L4