HL_8BHF_016

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

8BHF|1|A2|A|967, 8BHF|1|A2|C|968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_016 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1208

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8BHF|1|A2|C|963
8BHF|1|A2|G|964
8BHF|1|A2|A|965
8BHF|1|A2|G|966
8BHF|1|A2|A|967
8BHF|1|A2|C|968
8BHF|1|A2|C|969
8BHF|1|A2|C|970
8BHF|1|A2|G|971

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain n3

60S ribosomal protein L6

Chain o3

60S ribosomal protein L7