HL_8BHF_023

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8BHF|1|A2|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_023 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3594

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|G|1479
8BHF|1|A2|C|1480
8BHF|1|A2|C|1481
8BHF|1|A2|G|1482
8BHF|1|A2|C|1483
8BHF|1|A2|G|1484
8BHF|1|A2|C|1485
8BHF|1|A2|C|1486

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain V1

60S ribosomal protein L36

Chain t3

60S ribosomal protein L13