HL_8BHF_028

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGAAACGAU

Length

11 nucleotides

Bulged bases

8BHF|1|A2|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|G|1761
8BHF|1|A2|C|1762
8BHF|1|A2|C|1763
8BHF|1|A2|G|1764
8BHF|1|A2|A|1765
8BHF|1|A2|A|1766
8BHF|1|A2|A|1767
8BHF|1|A2|C|1768
8BHF|1|A2|G|1769
8BHF|1|A2|A|1770
8BHF|1|A2|U|1771

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Q3

40S ribosomal protein S15

Chain T3

40S ribosomal protein S18

Chain s3

60S ribosomal protein L11