HL_8BHF_036

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_036 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1366

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BHF|1|A2|A|2379
8BHF|1|A2|C|2380
8BHF|1|A2|G|2381
8BHF|1|A2|A|2382
8BHF|1|A2|G|2383
8BHF|1|A2|A|2384
8BHF|1|A2|A|2385
8BHF|1|A2|C|2386
8BHF|1|A2|U|2387

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain E1

Ribosomal protein L19

Chain Q1

60S ribosomal protein L31