HL_8BHF_037

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8BHF|1|A2|G|2424, 8BHF|1|A2|U|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_037 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.21

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8BHF|1|A2|A|2423
8BHF|1|A2|G|2424
8BHF|1|A2|C|2425
8BHF|1|A2|A|2426
8BHF|1|A2|G|2427
8BHF|1|A2|U|2428
8BHF|1|A2|U|2429

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain E1

Ribosomal protein L19

Chain Y1

60S ribosomal protein L39-like