HL_8BHF_040

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8BHF|1|A2|U|2533, 8BHF|1|A2|C|2534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_040 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0961

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|G|2526
8BHF|1|A2|U|2527
8BHF|1|A2|U|2528
8BHF|1|A2|C|2529
8BHF|1|A2|A|2530
8BHF|1|A2|G|2531
8BHF|1|A2|A|2532
8BHF|1|A2|U|2533
8BHF|1|A2|C|2534
8BHF|1|A2|C|2535

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain K1

Ribosomal protein L23/L25 N-terminal domain-containing protein

Chain T1

60S ribosomal protein L34