HL_8BHF_041

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_041 not in the Motif Atlas

Geometric match to HL_2ZZM_003

Geometric discrepancy: 0.1475

The information below is about HL_2ZZM_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BHF|1|A2|C|2564
8BHF|1|A2|G|2565
8BHF|1|A2|C|2566
8BHF|1|A2|G|2567
8BHF|1|A2|A|2568
8BHF|1|A2|G|2569

Current chains

Chain A2

28S ribosomal RNA

Nearby chains