HL_8BHF_042

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_042 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0845

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A2|G|2581
8BHF|1|A2|G|2582
8BHF|1|A2|U|2583
8BHF|1|A2|A|2584
8BHF|1|A2|A|2585
8BHF|1|A2|C|2586

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain M1

60S ribosomal protein L27

Chain T1

60S ribosomal protein L34