HL_8BHF_043

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8BHF|1|A2|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_043 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1764

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|G|2627
8BHF|1|A2|U|2628
8BHF|1|A2|U|2629
8BHF|1|A2|C|2630
8BHF|1|A2|U|2631
8BHF|1|A2|C|2632
8BHF|1|A2|U|2633
8BHF|1|A2|U|2634
8BHF|1|A2|U|2635

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain H1

60S ribosomal protein L22