HL_8BHF_045

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_045 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1767

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8BHF|1|A2|G|2708
8BHF|1|A2|G|2709
8BHF|1|A2|U|2710
8BHF|1|A2|U|2711
8BHF|1|A2|C|2712
8BHF|1|A2|C|2713

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19