HL_8BHF_053

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8BHF|1|A2|C|3668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_053 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2053

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A2|C|3663
8BHF|1|A2|G|3664
8BHF|1|A2|C|3665
8BHF|1|A2|G|3666
8BHF|1|A2|G|3667
8BHF|1|A2|C|3668
8BHF|1|A2|G|3669

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain j3

60S ribosomal protein L8

Chain p3

60S ribosomal protein L7a