HL_8BHF_054

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_054 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1259

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A2|A|3719
8BHF|1|A2|G|3720
8BHF|1|A2|A|3721
8BHF|1|A2|A|3722
8BHF|1|A2|A|3723
8BHF|1|A2|U|3724

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain V1

60S ribosomal protein L36

Chain b1

Ribosomal protein L36a like

Chain l1

60S ribosomal protein L10a