HL_8BHF_057

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BHF|1|A2|A|3871, 8BHF|1|A2|A|3872, 8BHF|1|A2|C|3873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_057 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0493

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|G|3868
8BHF|1|A2|G|3869
8BHF|1|A2|G|3870
8BHF|1|A2|A|3871
8BHF|1|A2|A|3872
8BHF|1|A2|C|3873
8BHF|1|A2|G|3874
8BHF|1|A2|G|3875
8BHF|1|A2|G|3876
8BHF|1|A2|C|3877

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein L32

Chain k3

Ribosomal protein L3