HL_8BHF_065

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_065 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0928

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A2|U|4307
8BHF|1|A2|G|4308
8BHF|1|A2|A|4309
8BHF|1|A2|A|4310
8BHF|1|A2|A|4311
8BHF|1|A2|G|4312

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L21

Chain b1

Ribosomal protein L36a like

Chain m3

60S ribosomal protein L5