HL_8BHF_069

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_069 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1031

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BHF|1|A2|U|4483
8BHF|1|A2|U|4484
8BHF|1|A2|G|4485
8BHF|1|A2|U|4486
8BHF|1|A2|U|4487
8BHF|1|A2|C|4488
8BHF|1|A2|A|4489

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain k3

Ribosomal protein L3