HL_8BHF_071

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_071 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0617

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8BHF|1|A2|C|4589
8BHF|1|A2|G|4590
8BHF|1|A2|A|4591
8BHF|1|A2|G|4592
8BHF|1|A2|A|4593
8BHF|1|A2|G|4594

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain q3

60S ribosomal protein L9