HL_8BHF_073

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BHF|1|A2|G|4680, 8BHF|1|A2|C|4684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0655

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|C|4674
8BHF|1|A2|U|4675
8BHF|1|A2|G|4676
8BHF|1|A2|A|4677
8BHF|1|A2|A|4678
8BHF|1|A2|C|4679
8BHF|1|A2|G|4680
8BHF|1|A2|C|4681
8BHF|1|A2|C|4682
8BHF|1|A2|U|4683
8BHF|1|A2|C|4684
8BHF|1|A2|U|4685
8BHF|1|A2|A|4686
8BHF|1|A2|A|4687
8BHF|1|A2|G|4688

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain q3

60S ribosomal protein L9