HL_8BHF_075

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8BHF|1|A2|A|4892, 8BHF|1|A2|A|4893, 8BHF|1|A2|G|4896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_075 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1459

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|C|4888
8BHF|1|A2|G|4889
8BHF|1|A2|G|4890
8BHF|1|A2|A|4891
8BHF|1|A2|A|4892
8BHF|1|A2|A|4893
8BHF|1|A2|G|4894
8BHF|1|A2|G|4895
8BHF|1|A2|G|4896
8BHF|1|A2|G|4897

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain k3

Ribosomal protein L3