HL_8BHF_076

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8BHF|1|A2|U|4958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_076 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0971

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8BHF|1|A2|G|4957
8BHF|1|A2|U|4958
8BHF|1|A2|A|4959
8BHF|1|A2|G|4960
8BHF|1|A2|A|4961
8BHF|1|A2|C|4962
8BHF|1|A2|G|4963
8BHF|1|A2|A|4964
8BHF|1|A2|C|4965

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain k3

Ribosomal protein L3