HL_8BHF_079

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

8BHF|1|A3|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_079 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2587

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A3|C|69
8BHF|1|A3|G|70
8BHF|1|A3|G|71
8BHF|1|A3|C|72
8BHF|1|A3|C|73
8BHF|1|A3|G|74
8BHF|1|A3|G|75
8BHF|1|A3|U|76
8BHF|1|A3|A|77
8BHF|1|A3|C|78
8BHF|1|A3|A|79
8BHF|1|A3|G|80

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain J1

TRASH domain-containing protein