HL_8BHF_090

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_090 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1651

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BHF|1|A3|A|569
8BHF|1|A3|C|570
8BHF|1|A3|U|571
8BHF|1|A3|U|572
8BHF|1|A3|U|573
8BHF|1|A3|A|574
8BHF|1|A3|A|575
8BHF|1|A3|A|576
8BHF|1|A3|U|577
8BHF|1|A3|C|578
8BHF|1|A3|C|579
8BHF|1|A3|U|580
8BHF|1|A3|U|581

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain K3

Ribosomal protein S9 (Predicted)

Chain Z3

40S ribosomal protein S24