HL_8BHF_093
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8BHF|1|A3|G|821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_093 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.1361
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8BHF|1|A3|U|820
8BHF|1|A3|G|821
8BHF|1|A3|U|822
8BHF|1|A3|U|823
8BHF|1|A3|C|824
8BHF|1|A3|A|825
8BHF|1|A3|A|826
8BHF|1|A3|A|827
8BHF|1|A3|G|828
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S4
- Chain K3
- Ribosomal protein S9 (Predicted)
- Chain Z3
- 40S ribosomal protein S24
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