HL_8BHF_107

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_107 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3996

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8BHF|1|A3|C|1460
8BHF|1|A3|G|1461
8BHF|1|A3|U|1462
8BHF|1|A3|U|1463
8BHF|1|A3|C|1464
8BHF|1|A3|A|1465
8BHF|1|A3|G|1466

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain S3

40S ribosomal protein S17

Chain h3

Ribosomal protein RACK1