HL_8BHF_110
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8BHF|1|A3|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_110 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3111
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BHF|1|A3|G|1658
8BHF|1|A3|U|1659
8BHF|1|A3|C|1660
8BHF|1|A3|A|1661
8BHF|1|A3|U|1662
8BHF|1|A3|A|1663
8BHF|1|A3|A|1664
8BHF|1|A3|G|1665
8BHF|1|A3|C|1666
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain R3
- Ribosomal protein S16
- Chain T3
- 40S ribosomal protein S18
- Chain U3
- 40S ribosomal protein S19
- Chain V3
- Ribosomal protein S20
- Chain e3
- 40S ribosomal protein S29
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