HL_8BHF_115
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_115 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1519
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8BHF|1|C2|C|47
8BHF|1|C2|A|48
8BHF|1|C2|G|49
8BHF|1|C2|C|50
8BHF|1|C2|U|51
8BHF|1|C2|A|52
8BHF|1|C2|G|53
8BHF|1|C2|C|54
8BHF|1|C2|U|55
8BHF|1|C2|G|56
Current chains
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain U1
- 60S ribosomal protein L35
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
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