3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BHJ_086 not in the Motif Atlas
Homologous match to HL_5J7L_016
Geometric discrepancy: 0.1648
The information below is about HL_5J7L_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8BHJ|1|2|C|726
8BHJ|1|2|G|727
8BHJ|1|2|A|728
8BHJ|1|2|A|729
8BHJ|1|2|G|730
8BHJ|1|2|G|731

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain s
30S ribosomal protein S15
Chain y
30S ribosomal protein S21

Coloring options:


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