HL_8BHJ_086

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_086 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1648

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BHJ|1|2|C|726
8BHJ|1|2|G|727
8BHJ|1|2|A|728
8BHJ|1|2|A|729
8BHJ|1|2|G|730
8BHJ|1|2|G|731

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain s

30S ribosomal protein S15

Chain y

30S ribosomal protein S21