HL_8BHL_009

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8BHL|1|0|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHL_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1183

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8BHL|1|0|C|305
8BHL|1|0|U|306
8BHL|1|0|G|307
8BHL|1|0|G|308
8BHL|1|0|A|309
8BHL|1|0|A|310
8BHL|1|0|A|311
8BHL|1|0|G|312

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain R

50S ribosomal protein L24