HL_8BHL_016

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8BHL|1|0|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHL_016 not in the Motif Atlas

Geometric match to HL_9SUM_018

Geometric discrepancy: 0.3802

The information below is about HL_9SUM_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8BHL|1|0|G|543
8BHL|1|0|C|544
8BHL|1|0|U|545
8BHL|1|0|U|546
8BHL|1|0|A|547
8BHL|1|0|G|548
8BHL|1|0|G|549
8BHL|1|0|C|550

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13