HL_8BHN_009

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8BHN|1|0|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1441

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8BHN|1|0|C|305
8BHN|1|0|U|306
8BHN|1|0|G|307
8BHN|1|0|G|308
8BHN|1|0|A|309
8BHN|1|0|A|310
8BHN|1|0|A|311
8BHN|1|0|G|312

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain R

50S ribosomal protein L24