HL_8BHN_013

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8BHN|1|0|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1363

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BHN|1|0|G|410
8BHN|1|0|G|411
8BHN|1|0|A|412
8BHN|1|0|C|413
8BHN|1|0|C|414
8BHN|1|0|A|415
8BHN|1|0|U|416
8BHN|1|0|C|417

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains