3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
8BHN|1|0|A|1780, 8BHN|1|0|U|1781, 8BHN|1|0|U|1782, 8BHN|1|0|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BHN_043 not in the Motif Atlas
Homologous match to HL_4WF9_043
Geometric discrepancy: 0.1344
The information below is about HL_4WF9_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

8BHN|1|0|U|1777
8BHN|1|0|U|1778
8BHN|1|0|U|1779
8BHN|1|0|A|1780
8BHN|1|0|U|1781
8BHN|1|0|U|1782
8BHN|1|0|A|1783
8BHN|1|0|A|1784
8BHN|1|0|A|1785
8BHN|1|0|A|1786
8BHN|1|0|A|1787

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2
Chain c
50S ribosomal protein L34

Coloring options:


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