HL_8BHN_101
3D structure
- PDB id
- 8BHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8BHN|1|4|C|16, 8BHN|1|4|U|17, 8BHN|1|4|G|18, 8BHN|1|4|G|19, 8BHN|1|4|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHN_101 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.3005
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8BHN|1|4|C|12
8BHN|1|4|A|13
8BHN|1|4|G|14
8BHN|1|4|C|15
8BHN|1|4|C|16
8BHN|1|4|U|17
8BHN|1|4|G|18
8BHN|1|4|G|19
8BHN|1|4|U|20
8BHN|1|4|A|21
8BHN|1|4|G|22
Current chains
- Chain 4
- Deacylated P-site tRNA(fMet)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
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