HL_8BHN_104

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAG(H2U)(H2U)GG(H2U)AG

Length

10 nucleotides

Bulged bases

8BHN|1|5|G|18, 8BHN|1|5|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHN_104 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.2374

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8BHN|1|5|C|13
8BHN|1|5|A|14
8BHN|1|5|G|15
8BHN|1|5|H2U|16
8BHN|1|5|H2U|17
8BHN|1|5|G|18
8BHN|1|5|G|19
8BHN|1|5|H2U|20
8BHN|1|5|A|21
8BHN|1|5|G|22

Current chains

Chain 5

Dipeptidyl A-site tRNA(Lys)

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain 4

Transfer RNA; tRNA