HL_8BHP_009

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8BHP|1|0|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHP_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1198

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8BHP|1|0|C|305
8BHP|1|0|U|306
8BHP|1|0|G|307
8BHP|1|0|G|308
8BHP|1|0|A|309
8BHP|1|0|A|310
8BHP|1|0|A|311
8BHP|1|0|G|312

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain R

50S ribosomal protein L24