HL_8BHP_030

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHP_030 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1538

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8BHP|1|0|G|1281
8BHP|1|0|U|1282
8BHP|1|0|G|1283
8BHP|1|0|A|1284
8BHP|1|0|A|1285
8BHP|1|0|A|1286
8BHP|1|0|A|1287
8BHP|1|0|G|1288
8BHP|1|0|C|1289

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22