HL_8BHP_075

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8BHP|1|2|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHP_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1193

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BHP|1|2|G|259
8BHP|1|2|G|260
8BHP|1|2|U|261
8BHP|1|2|A|262
8BHP|1|2|A|263
8BHP|1|2|C|264
8BHP|1|2|G|265
8BHP|1|2|G|266
8BHP|1|2|C|267

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain u

30S ribosomal protein S17

Chain x

30S ribosomal protein S20