HL_8BHP_098

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHP_098 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1363

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BHP|1|2|C|1314
8BHP|1|2|U|1315
8BHP|1|2|G|1316
8BHP|1|2|C|1317
8BHP|1|2|A|1318
8BHP|1|2|A|1319
8BHP|1|2|C|1320
8BHP|1|2|U|1321
8BHP|1|2|C|1322
8BHP|1|2|G|1323

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain q

30S ribosomal protein S13

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19