HL_8BIL_048

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8BIL|1|0|A|2030, 8BIL|1|0|A|2031, 8BIL|1|0|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.131

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BIL|1|0|G|2027
8BIL|1|0|U|2028
8BIL|1|0|G|2029
8BIL|1|0|A|2030
8BIL|1|0|A|2031
8BIL|1|0|G|2032
8BIL|1|0|A|2033
8BIL|1|0|U|2034
8BIL|1|0|G|2035
8BIL|1|0|C|2036

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain a

50S ribosomal protein L32