HL_8BIL_052

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8BIL|1|0|A|2268, 8BIL|1|0|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1122

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8BIL|1|0|C|2264
8BIL|1|0|U|2265
8BIL|1|0|A|2266
8BIL|1|0|A|2267
8BIL|1|0|A|2268
8BIL|1|0|G|2269
8BIL|1|0|A|2270
8BIL|1|0|G|2271
8BIL|1|0|U|2272
8BIL|1|0|A|2273
8BIL|1|0|A|2274
8BIL|1|0|C|2275
8BIL|1|0|G|2276

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27