HL_8BIL_094

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8BIL|1|2|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1035

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8BIL|1|2|G|1089
8BIL|1|2|U|1090
8BIL|1|2|U|1091
8BIL|1|2|A|1092
8BIL|1|2|A|1093
8BIL|1|2|G|1094
8BIL|1|2|U|1095
8BIL|1|2|C|1096

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain k

30S ribosomal protein S7

Chain y

30S ribosomal protein S21